RESEARCH CATEGORY

Biology & Biomedical Research

Work with biological data, proteins, and medical imaging. The database currently includes 10 tools in this category.

Biology & Biomedical Research

AlphaFold

DeepMind's protein-structure prediction system, with open AlphaFold 2 code and a public database of predicted structures.

Open sourceOpen source
proteinsstructure prediction
View tool
Biology & Biomedical Research

Benchling

A cloud platform for biotechnology research that combines electronic lab records, sequence tools, and research data management.

Contact for pricing
electronic lab notebooksequence design
View tool
Biology & Biomedical Research

DeepChem

An open-source Python library for applying machine learning to drug discovery, quantum chemistry, biology, and materials problems.

Open sourceOpen source
drug discoverymachine learning
View tool
Biology & Biomedical Research

NVIDIA BioNeMo

A collection of frameworks, models, and deployment tools for generative AI in biomolecular and drug research.

Contact for pricing
biomolecular AIdrug research
View tool
Biology & Biomedical Research

OpenFold

A trainable open-source implementation of AlphaFold 2 intended for protein-structure research and model development.

Open sourceOpen source
proteinsopen model
View tool
Biology & Biomedical Research

ColabFold

An open-source workflow that combines accelerated sequence search with AlphaFold-based structure prediction.

Open sourceOpen source
proteinsstructure prediction
View tool
Biology & Biomedical Research

NCBI BLAST

NCBI sequence-search tools for finding local similarity between nucleotide or protein queries and sequence databases.

FreeOpen source
sequence searchbioinformatics
View tool
Biology & Biomedical Research

Galaxy

An open web platform for running, documenting, and sharing reproducible computational biology workflows.

Open sourceOpen source
bioinformaticsreproducible workflows
View tool
Biology & Biomedical Research

CellProfiler

Open-source software for building pipelines that measure cellular and other biological features in microscopy images.

Open sourceOpen source
microscopycell analysis
View tool
Biology & Biomedical Research

MONAI

An open-source framework built on PyTorch for developing and deploying deep-learning workflows in medical imaging.

Open sourceOpen source
medical imagingdeep learning
View tool